I extracted out the items that are recurring as good predictors for various symptoms. These are listed below. This is intended for those interested in research and diving deep. See AI Computed Probiotics from Symptoms for background.
See also Key Enzymes for Symptoms and Key Compounds for Symptoms. What is surprising is that “non-of-the-usual suspects” were included with the exception of spotted fever groups (i.e. Rickettsia, Lyme) and Staphylococcus aureus (see Staphylococcus aureus – the CFS maintainer?)
tax_name | tax_rank | Taxon |
Protostomia | clade | 33317 |
Calditrichia | class | 1962850 |
Paraneoptera | cohort | 33342 |
Alteromonadaceae | family | 72275 |
Coxiellaceae | family | 118968 |
Euzebyaceae | family | 908622 |
Holophagaceae | family | 574976 |
Ignavibacteriaceae | family | 795749 |
Nocardiopsaceae | family | 83676 |
Thermoanaerobacterales Family III. Incertae Sedis | family | 543371 |
unclassified Clostridiales | family | 186813 |
Alkalibaculum | genus | 696745 |
Anaerobium | genus | 1855714 |
Anaerocella | genus | 1634949 |
Anaerococcus | genus | 165779 |
Cellulosilyticum | genus | 698776 |
Cryomorpha | genus | 246876 |
Desulfomonile | genus | 2357 |
Euzebya | genus | 908623 |
Haliangium | genus | 162027 |
Hungatella | genus | 1649459 |
Lacibacterium | genus | 1500420 |
Pectobacterium | genus | 122277 |
Spiroplasma | genus | 2132 |
Sporomusa | genus | 2375 |
Terrisporobacter | genus | 1505652 |
Trichococcus | genus | 82802 |
Vagococcus | genus | 2737 |
Neoptera | infraclass | 33340 |
unclassified Chloroflexi | norank | 167963 |
Actinomycetales | order | 2037 |
Chlorobiales | order | 191411 |
Euzebyales | order | 908621 |
Hemiptera | order | 7524 |
Ignavibacteriales | order | 795748 |
Acetonema longum | species | 2374 |
Anaerobranca zavarzinii | species | 436000 |
Anaeromyxobacter dehalogenans | species | 161493 |
Bacteroides propionicifaciens | species | 392838 |
Bifidobacterium thermacidophilum | species | 246618 |
Brevibacterium paucivorans | species | 170994 |
Brochothrix thermosphacta | species | 2756 |
Caloramator mitchellensis | species | 908809 |
Candidatus Tammella caduceiae | species | 435141 |
Carboxylicivirga linearis | species | 1628157 |
Casaltella massiliensis | species | 938278 |
Corynebacterium canis | species | 679663 |
Desemzia incerta | species | 82801 |
Desulfarculus baarsii | species | 453230 |
Desulfonispora thiosulfatigenes | species | 83661 |
Desulfovibrio idahonensis | species | 575978 |
Desulfovibrio psychrotolerans | species | 415242 |
Desulfurispirillum alkaliphilum | species | 393030 |
Dolosigranulum pigrum | species | 29394 |
Haliscomenobacter hydrossis | species | 2350 |
Lactobacillus japonicus | species | 29399 |
Marvinbryantia formatexigens | species | 168384 |
Mediterraneibacter faecis | species | 592978 |
Megasphaera hominis | species | 159836 |
Phascolarctobacterium succinatutens | species | 626940 |
Proteiniborus ethanoligenes | species | 415015 |
Pseudoflavonifractor capillosus | species | 106588 |
Pseudoramibacter alactolyticus | species | 113287 |
Pseudoscillatoria coralii | species | 693994 |
Skermanella aerolata | species | 393310 |
Slackia sp. NATTS | species | 647703 |
Spiroplasma ixodetis | species | 2141 |
Staphylococcus aureus | species | 1280 |
Streptomonospora alba | species | 183763 |
Thermoactinomyces vulgaris | species | 2026 |
Thermophagus xiamenensis | species | 385682 |
Thermovenabulum ferriorganovorum | species | 159731 |
Uliginosibacterium gangwonense | species | 392736 |
Veillonella criceti | species | 103891 |
Verrucomicrobium spinosum | species | 2736 |
spotted fever group | species group | 114277 |
Eukaryota | superkingdom | 2759 |
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