Key Bacteria for Symptoms

I extracted out the items that are recurring as good predictors for various symptoms. These are listed below. This is intended for those interested in research and diving deep. See AI Computed Probiotics from Symptoms for background.

See also Key Enzymes for Symptoms and Key Compounds for Symptoms. What is surprising is that “non-of-the-usual suspects” were included with the exception of spotted fever groups (i.e. Rickettsia, Lyme) and Staphylococcus aureus (see Staphylococcus aureus – the CFS maintainer?)

tax_nametax_rankTaxon
Protostomiaclade33317
Calditrichiaclass1962850
Paraneopteracohort33342
Alteromonadaceaefamily72275
Coxiellaceaefamily118968
Euzebyaceaefamily908622
Holophagaceaefamily574976
Ignavibacteriaceaefamily795749
Nocardiopsaceaefamily83676
Thermoanaerobacterales Family III. Incertae Sedisfamily543371
unclassified Clostridialesfamily186813
Alkalibaculumgenus696745
Anaerobiumgenus1855714
Anaerocellagenus1634949
Anaerococcusgenus165779
Cellulosilyticumgenus698776
Cryomorphagenus246876
Desulfomonilegenus2357
Euzebyagenus908623
Haliangiumgenus162027
Hungatellagenus1649459
Lacibacteriumgenus1500420
Pectobacteriumgenus122277
Spiroplasmagenus2132
Sporomusagenus2375
Terrisporobactergenus1505652
Trichococcusgenus82802
Vagococcusgenus2737
Neopterainfraclass33340
unclassified Chloroflexinorank167963
Actinomycetalesorder2037
Chlorobialesorder191411
Euzebyalesorder908621
Hemipteraorder7524
Ignavibacterialesorder795748
Acetonema longumspecies2374
Anaerobranca zavarziniispecies436000
Anaeromyxobacter dehalogenansspecies161493
Bacteroides propionicifaciensspecies392838
Bifidobacterium thermacidophilumspecies246618
Brevibacterium paucivoransspecies170994
Brochothrix thermosphactaspecies2756
Caloramator mitchellensisspecies908809
Candidatus Tammella caduceiaespecies435141
Carboxylicivirga linearisspecies1628157
Casaltella massiliensisspecies938278
Corynebacterium canisspecies679663
Desemzia incertaspecies82801
Desulfarculus baarsiispecies453230
Desulfonispora thiosulfatigenesspecies83661
Desulfovibrio idahonensisspecies575978
Desulfovibrio psychrotoleransspecies415242
Desulfurispirillum alkaliphilumspecies393030
Dolosigranulum pigrumspecies29394
Haliscomenobacter hydrossisspecies2350
Lactobacillus japonicusspecies29399
Marvinbryantia formatexigensspecies168384
Mediterraneibacter faecisspecies592978
Megasphaera hominisspecies159836
Phascolarctobacterium succinatutensspecies626940
Proteiniborus ethanoligenesspecies415015
Pseudoflavonifractor capillosusspecies106588
Pseudoramibacter alactolyticusspecies113287
Pseudoscillatoria coraliispecies693994
Skermanella aerolataspecies393310
Slackia sp. NATTSspecies647703
Spiroplasma ixodetisspecies2141
Staphylococcus aureusspecies1280
Streptomonospora albaspecies183763
Thermoactinomyces vulgarisspecies2026
Thermophagus xiamenensisspecies385682
Thermovenabulum ferriorganovorumspecies159731
Uliginosibacterium gangwonensespecies392736
Veillonella cricetispecies103891
Verrucomicrobium spinosumspecies2736
spotted fever groupspecies group114277
Eukaryotasuperkingdom2759

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