I am open sourcing many of the components that I used, or intend to use, on my site: http://microbiomeprescription.com/

This is done by a series of posts looking at components in isolation that will build up to a basic web site that people may evolve for their own needs. The current published posts and structure are below

• Uploading NCBI Bacteris Hierarchy needed for
  • Upload Taxon Number Data : uBiome Json
  • Upload Taxon Number Data: Thryve (Ordering)
  • Upload Taxon Name based Files
  • Upload Taxon Name PDF files
  • Commercial Medical Lab Reports
• Uploading Medical Diagnosis (ICD Codes)
• Uploading Medical/Scientific Studies (National Institute of Health)
• Statistics:
  • Removing Duplicate Uploads
  • Computing Core Statistics
• Relationship Data Schema (Lab results, Citations, ICD, taxonomy)
  • Other Medical Properties
• NonParametric and Assembling a Library

Next Week:

• Importing microbiome and related data from my site
• Exporting data to share with other sites
• Exporting data for Data Science
• Determining relationship between different bacteria (friend or foe)

The source is available at:

https://github.com/Lassesen/Microbiome2